Gupta, A., Bug, W., Marenco L., Qian, X., Condit, C., Rangaraja,n A.,
Müller, H.M., Miller,P.L., Sanders, B., Grethe, J.S., Astakhov, V., Shepherd, G., Sternberg,
P.W., Martone, M.E. (2008).Federated access to heterogeneous information
resources in the NeuroscienceInformation Framework (NIF).
Neuroinformatics 6:205-217.
Hu, M., LeRonde-LeBlanc, N., Sternberg, P. W. and Gasser, R. B. (2008).
Tv-RIO1 - an atypical protein kinase from the parasitic nematode
Trichostrongylus vitrinus. Parasites & Vectors 1:34
doi:10.1186/1756-3305-1-34
Campbell B.E., Nagaraj S.H., Hu M., Zhong W., Sternberg P.W., Ong E.K., Loukas A., Ranganathan S., Beveridge I., McInnes R..L, Hutchinson G.W.,
Gasser R.B. (2008). Gender-enriched transcripts in Haemonchus contortus - predicted functions and genetic interactions based on comparative
analyses with Caenorhabditis elegans. Int J Parasitol., 38: 65-83.
Rogers A, Antoshechkin I, Bieri T, Blasiar D, Bastiani C, Canaran P, Chan J, Chen WJ, Davis P, Fernandes J, Fiedler TJ, Han M, Harris TW, Kishore
R, Lee R, McKay S, Müller HM, Nakamura C, Ozersky P, Petcherski A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D,
Wang X,
Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW. (2008). Nucleic Acids Res. 36(Database issue): D612-617.
Cui, X., Lee, L. M., Heng, X., Zhong, Z., Sternberg, P. W., Psaltis, D., and Yang, C. (2008). Imaging microorganisms with a high resolution
on-chip optofluidic microscope. Proc. Natl. Acad. Sci. USA 105(31):10670-10675.
Green, J. L., Inoue, T., and Sternberg, P.W. (2008). Opposing Wnt pathways orient cell polarity during organogenesis. Cell 134:
646-656.
Srinivasan, J., Kaplan, F., Ajredini, R., Zachariah, C., Alborn, H., Teal, P., Malik, R. U., Edison, A. E., Sternberg, P. W., and Schroeder, F.
C. (2008). A blend of small molecules regulates both mating and development in Caenorhabditis elegans. Nature 454: 1115-1118.
Green, J. L., Kuntz, S. G. and Sternberg, P. W. (2008). Ror receptor kinases: orphans no more. Trends Cell Biol. 18:536-544.
Sternberg, P. W. (2008). Destiny is Anatomy: The C. elegans Atlas (Book Review). Development , in press.
Cantacessi, C., Loukas, A., Campbell, B.E., Ong, E.K., Zhong, W., Sternberg, P.W., Otranto, D., and Gasser, R.B. (2008). Evidence of
transcriptional conservation between Haemonchus contortus and Ancylostoma caninum inferred by cross-species microarray analysis. Molecular
and Cellular Probes , in press.
Müller, H.-M., Rangarajan, A., Teal, T. K. and Sternberg, P. W. (2008). Textpresso for Neuroscience: searching the full text of
thousands of
Neuroscience research papers. J. Neuroinformatics 6:195-204.
Gardner, D., Akil, H., Ascoli, G. A., Bowden, D. M., Bug, W., Donohue, D. E., Goldberg, D. H., Grafstein, B., Grethe, J. S., Gupta, A., Halavi,
M., Kennedy, D. N., Marenco, L., Martone, M. E. Miller, P., Müller, H.-M., Robert, A., Shephard, G. M., Sternberg, P. W., Van Essen, D. C. and
Williams, R. W. (2008). The Neuroscience Information Framework: a data and knowledge environment for Neuroscience. Journal of
Neuroinformatics 6:149-160.
Marenco, M., Li, Y., Martone, M., Sternberg, P. W., Shepherd, G., and Miller, P. (2008). Issues in the design of a pilot concept-based query
interface for the Neuroinformatics Information Framework. Journal of Neuroinformatics 6:229-239.
Srinivasan, J., and Sternberg, P. W. (2008). Pristionchus pacificus: an
appropriate fondness for beetles. Nature Genetics 40:
1146-1147.
Ririe, T. O., Fernandes, J. and Sternberg, P. W. (2008). The Caenorhabditis elegans vulva: A post-embryonic gene regulatory network controlling
organogenesis. PNAS, in press.
Huang CQ, Gasser RB, Cantacessi C, Nisbet AJ, Zhong W, Sternberg PW, Loukas A, Mulvenna J, Lin RQ, Chen N, Zhu XQ. (2008).
Genomic-Bioinformatic Analysis of Transcripts Enriched in the Third-Stage Larva of the Parasitic Nematode Ascaris suum. PLoS Negl Trop
Dis.
2:e246.
Hallem EA, Sternberg PW. (2008)
Acute carbon dioxide avoidance in Caenorhabditis elegans.
Proc Natl Acad Sci U S A. 105:8038-8043.
2007
Bai, X., Grewal, P. S., Hogenhout, S. A., Adams, B. J., Ciche, T. A. Gaughler, R. and Sternberg, P. W. (2007). Expressed sequence tag analysis
of gene representation in insect parasitic nematode Heterorhabditis bacteriophora. Journal of Parasitology 93: 1343-1349.
The Gene Ontology Consortium (2007). The Gene Ontology project in 2008
Nucleic Acids Research doi: 10.1093/nar/gkm883.
[Abstract],
[Full Text],
[PDF]
Green, J. L., Inoue, T. and Sternberg, P. W. (2007). The C. elegans
ROR RTK, CAM-1, non-autonomously inhibits the Wnt pathway.
Development, 134:4053-4062.
Van Buskirk, C. and Sternberg, P. W. (2007). EGF signaling induces
behavioral quiescence in C. elegans. Nature
Neuroscience, 10:1300-1307.
Ciche, T.A. and Sternberg P. W. (2007). Postembryonic RNAi in
Heterorhabditis bacteriophora: a nematode insect parasite and host
for insect pathogenic symbionts.
BMC Developmental Biology. 7:101.
Karbowski, J., Schindelman, G.., Cronin, C. J., Seah, A., and Sternberg,
P.W. (2007). Systems level circuit model of C. elegans undulatory
locomotion: mathematical modeling and molecular genetics.
J. Computational Neurosci. 24:253-276.
Zhong W, Sternberg PW. (2007).
Automated data integration for developmental biological research.
Development. 134:3227-3238.
Inoue T, Ailion M, Poon S, Kim HK, Thomas JH, Sternberg PW. (2007).
Genetic analysis of dauer formation in Caenorhabditis briggsae.
Genetics. 177:809-818.
Bieri T, Blasiar D, Ozersky P, Antoshechkin I, Bastiani C, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Han M, Harris
TW, Kishore R, Lee R, McKay S, Muller HM, Nakamura C, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Spooner W, Tuli MA,
Auken KV, Wang D, Wang X, Williams G, Durbin R, Stein LD, Sternberg PW, Spieth J. (2007).
WormBase: new content and better access. Nucleic Acids Res. 35 (Database issue):D506-510.
Girard LR, Fiedler TJ, Harris TW, Carvalho F, Antoshechkin I, Han M,
Sternberg PW, Stein LD, Chalfie M. (2007). WormBook: the online
review
of Caenorhabditis elegans biology. Nucleic Acids
Res. 35 (Database
issue):D472-475.
Kee, Y., Hwang, B.J., Sternberg, P.W., and Bronner-Fraser, M.
(2007).
Evolutionary conservation of cell migration genes: from nematode
neurons
to vertebrate neural crest. Genes & Development 21
:391-396.
Modzelewska, K., Elgort, M. G., Huang, J., Jongeward, G., Lauritzen,
A.,
Yoon, C. H., Sternberg, P. W. and Moghal, N. (2007). An activating
mutation in sos-1 identifies its Dbl domain as a critical inhibitor
of
the EGFR pathway during C. elegans vulval development.
Molec. Cell Biol. 27(10):3695-3707.
Antoshechkin, I. and Sternberg, P. W. (2007). The versatile worm: genetic and genomic resources for Caenorhabditis elegans research.
Nat. Rev. Genetics8(7):518-532.
Hallem, E., A., Rengarajan, M., Ciche, T. A. and Sternberg, P.W. (2007).
Nematodes, bacteria, and flies: a tripartite model for nematode
parasitism. Current Biology 17(10): 898-904.
Fernandes JS and Sternberg PW.
The tailless Ortholog nhr-67 Regulates Patterning of Gene
Expression and
Morphogenesis in the C. elegans Vulva.
PloS Genetics 2007, 3:e69.
[Full Text]
Hwang BJ, Meruelo AD, Sternberg PW.
C. elegans EVI1 proto-oncogene, EGL-43, is necessary for Notch-mediated cell fate specification and regulates cell invasion.
Development 2007, 134:669-679.
2006
Feng, Z., Li, W., Ward, A., Piggott, B.J., Larkspur, E.R., Sternberg,
P.W., and Xu, X.Z.S. (2006). A C. elegans model of
nicotine-dependent behavior: regulation by TRP-family channels.
Cell 127: 621-633.
Girard LR, Fiedler TJ, Harris TW, Carvalho F, Antoshechkin I, Han M, Sternberg PW, Stein LD, Chalfie M.
WormBook: the online review of Caenorhabditis elegans biology
Nucleic Acids Research 2006, doi: 10.1093/nar/gkl894
[Abstract]
[Full Text]
[Pdf]
Chen D, Muller HM and Sternberg PW.
Automatic document classification of biological literature.
BMC Bioinformatics 2006, 7:370.
Schindelman G, Whittaker AJ, Thum JY, Gharib S, Sternberg PW.
Initiation of male sperm-transfer behavior in Caenorhabditis elegans requires input from the ventral nerve cord.
BMC Biol. 2006, 4:26.
[
Full Text
]
Karbowski J, Cronin CJ, Seah A, Mendel JE, Cleary D, Sternberg PW.
Conservation rules, their breakdown, and optimality in Caenorhabditis sinusoidal locomotion.
J Theor Biol. 2006, 242:652-669.
Gonzalez-Serricchio AS, Sternberg PW.
Visualization of C. elegans transgenic arrays by GFP.
BMC Genet. 2006, 7:36.
Baugh, L. R., and Sternberg, P. W. Insulin/IGF-1 signaling
regulates the cyclin dependent kinase inhibitor cki-1 and the
microRNA lin-4 during C. elegans L1 arrest. Current
Biology, 2006, 16:780-785.
Zhong, W. and Sternberg, P.W. Genome-wide prediction of C.
elegans genetic interactions. Science., 2006, 311:
1481-1484. [Abstract]
[Full
Text]
[link to
database]
Li, W., Feng, Z., Sternberg, P. W., and Xu, X. Z. S. A C.
elegans stretch-sensitive neuron revealed by a mechanosensitive TRP
channel homologue. Nature, 2006, 440:684-687.
Giurumescu, C., Sternberg, P. and Asthagiri, A. Intercellular
coupling amplifies fate segregation during C. elegans vulval
development. Proc. Natl. Acad. Sci, USA 2006, 103:
1331-1336.
2005
Sternberg, P. W., Vulval development (June 25, 2005), WormBook, ed. The
C. elegans Research Community, WormBook
, doi/10.1895/wormbook.1.6.1. http://www.wormbook.org.
Schwarz EM, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Canaran P, Chan J, Chen N, Chen
WJ, Davis P, Fiedler TJ, Girard L, Harris TW, Kenny EE, Kishore R, Lawson D, Lee R, Muller HM,
Nakamura C, Ozersky P, Petcherski A, Rogers A, Spooner W, Tuli MA, Van Auken K, Wang D, Durbin
R, Spieth J, Stein LD, Sternberg PW. WormBase: better software, richer content.
Nucleic Acids Res. 2006, 34(Database issue):D475-D478.
Sherwood DR, Butler JA, Kramer JM, Sternberg PW. FOS-1 promotes basement-membrane removal
during anchor-cell invasion in C. elegans.
Cell. 2005, 121(6):951-962.
Inoue T, Wang M, Ririe TO, Fernandes JS, Sternberg PW. Transcriptional network underlying
Caenorhabditis elegans vulval development. Proc Natl Acad Sci U S A.
2005, 102(14):4972-4977.
Chen N, Harris TW, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Canaran
P, Chan J, Chen CK, Chen WJ, Cunningham F, Davis P, Kenny E, Kishore R, Lawson D, Lee R,
Muller HM, Nakamura C, Pai S, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken
K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD. WormBase: a comprehensive data
resource for Caenorhabditis biology and genomics. Nucleic Acids Res.
2005, 33(Database issue):D383-D389.
Cronin CJ, Mendel JE, Muhktar S, Kim YM, Stirbl RC, Bruck J,
Sternberg PW. An automated system for measuring parameters of nematode sinusoidal movement.
BMC Genet. 2005, 6(1):5. link
2004
Inoue T, Oz HS, Wiland D, Gharib S, Deshpande R, Hill RJ, Katz WS, Sternberg PW.
C. elegans LIN-18 is a Ryk ortholog and functions in parallel to LIN-17/Frizzled in Wnt
signaling. Cell. 2004, 118(6):795-806.
Muller HM, Kenny EE, Sternberg PW. Textpresso: an ontology-based information retrieval and
extraction system for biological literature. PLoS Biol. 2004, 2(11):e309.
link to Textpresso
Miley, G. R. K., Fantz, D., Glossip, D., Lu, X., Saito, R. M., Inoue, T., Palmer, R. A.,
van den Heuvel, S., Sternberg, P. W., and Kornfeld, K. Identification of residues of the
Caenorhabditis elegans LIN-1 ETS domain that are necessary for DNA binding and
regulation of vulval cell fates. Genetics. 2004, 167(4): 1697-1709.
Kariya, K., Bui, Y.K., Gao, X., Sternberg, P.W., and Kataoka, T. Phospholipase Cε
regulates ovulation in Caenorhabditis elegans. Dev. Biol.
2004, 274(1): 201-210.
Whittaker, A. J. and Sternberg, P.W. Sensory processing by neural circuits in
Caenorhabditis elegans. Current Opinion in Neurobiology. 2004,
14(4): 450-456.
Bourbon, H.M., Aguilera, A., Ansari, A.Z., Asturias, F.J., Berk, A.J., Bjorklund, S.,
Blackwell, T.K., Borggrefe, T., Carey, M., Carlson, M., Conaway, J.W., Conaway, R.C., Emmons, S.W., Fondell, J.D., Freedman, L.P., Fukasawa, T., Gustafsson, C.M., Han, M., He, X., Herman, P.K., Hinnebusch, A.G., Holmberg, S., Holstege, F.C., Jaehning, J.A., Kim, Y.J., Kuras, L., Leutz, A., Lis, J.T., Meisterernest, M., Naar, A.M., Nasmyth, K., Parvin,J.D., Ptashne, M., Reinberg, D., Ronne, H., Sadowski, I., Sakurai, H., Sipiczki, M., Sternberg, P.W., Stillman, D.J., Strich, R, Struhl, K., Svejstrup, J.Q., Tuck, S., Winston, F., Roeder, R.G., Kornberg, R.D. A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II.
Mol Cell 2004, 14(5): 553-557.
Hajdu-Cronin, Y.M., Chen, W.J., and Sternberg, P.W. The L type Cyclin CYL-1 and the Heat Shock Factor HSF-1 are required for heat-shock induced protein expression in C. elegans.Genetics. 2004, 168(4):1937-1949.
Broday, L., Kolotuev, I., Didier, C., Bhoumik, A., Gupta, B. P., Sternberg, P. W., Podbilewicz, B., and Ronai, Z. The small ubiquitin-like modifier (SUMO) is required for gonadal and uterine-vulval morphogenesis in C. elegans.
Genes Dev. 2004, 18(19): 2380-2391.
Teng, Y., Girard, L., Ferreira, H. B., Sternberg, P. W., and Emmons, S. W. Dissection of cis-regulatory elements in the C. elegans Hox gene egl-5 promoter.
Devel. Biol. 2004, 276(2):476-492.
Levchenko, A., Bruck, J., Sternberg, P. W. Regulatory modules that generate biphasic signal response in biological systems.
Systems Biology. 2004, 1(1):139-148.
Feng, Z., Cronin, C. J., Wittig, J. H., Jr., Sternberg, P. W., and Schafer, W. R. An imaging system for standardized quantitative analysis of C. elegans behavior.
BMC Bioinformatics 2004, 5: 115.
Bastiani, C. A., Simon, M. I., and Sternberg, P. W. Control of Caenorhabditis
elegans behavior and development by G proteins big and small.
Cell Signalling in Prokaryotes and Lower Metazoa. 2004, Kluwer Academic Publ.,
pp 195-242.
Hwang BJ, Muller HM, Sternberg PW. Genome annotation by high-throughput 5' RNA end
determination. Proc Natl Acad Sci U S A. 2004, 101:1650-1655.
Sternberg PW. Developmental biology. A pattern of precision. Science. 2004,
303: 637-638.
Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T,
Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R,
Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K,
Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD. WormBase: a multi-species resource
for nematode biology and genomics. Nucleic Acids Res. 2004, 32:D411-417.
Hwang BJ, Sternberg PW. A cell-specific enhancer that specifies lin-3
expression in the C. elegans anchor cell for vulval development.
Development. 2004, 131:143-151.
2003
Bastiani CA, Gharib S, Simon MI, Sternberg PW. Caenorhabditis elegans
Gα(q) Regulates Egg-Laying Behavior via a PLCβ-Independent and Serotonin-Dependent
Signaling Pathway and Likely Functions Both in the Nervous System and in Muscle.
Genetics. 2003, 165(4):1805-1822.
Yu H, Pretot RF, Burglin TR, Sternberg PW. Distinct roles of transcription factors
EGL-46 and DAF-19 in specifying the functionality of a polycystin-expressing sensory neuron
necessary for C. elegans male vulva location behavior. Development.
2003, 130: 5217-5227.
Gupta BP, Sternberg PW. The draft genome sequence of the nematode Caenorhabditis
briggsae, a companion to C. elegans. Genome Biol. 2003, 4:238.
Moghal N, Sternberg PW. Extracellular domain determinants of LET-23 (EGF) receptor
tyrosine kinase activity in Caenorhabditis elegans. Oncogene. 2003,
22:5471-5480.
Moghal N, Garcia LR, Khan LA, Iwasaki K, Sternberg PW. Modulation of EGF receptor-mediated
vulva development by the heterotrimeric G-protein Gαq and excitable cells in C. elegans.
Development. 2003, 130:4553-4566.
Xu XZ, Sternberg PW. A C. elegans sperm TRP protein required for sperm-egg
interactions during fertilization. Cell. 2003, 114:285-297.
Sherwood DR, Sternberg PW. Anchor cell invasion into the vulval epithelium in C. elegans.
Dev Cell. 2003, 5:21-31.
Gupta BP, Wang M, Sternberg PW. The C. elegans LIM homeobox gene lin-11
specifies multiple cell fates during vulval development. Development.
2003, 130:2589-2601.
Kirouac M, Sternberg PW. cis-Regulatory control of three cell fate-specific genes
in vulval organogenesis of Caenorhabditis elegans and C. briggsae. Dev
Biol. 2003, 257:85-103.
Garcia LR, Sternberg PW. Caenorhabditis elegans UNC-103 ERG-like potassium channel
regulates contractile behaviors of sex muscles in males before and during mating. J
Neurosci. 2003, 23:2696-2705.
Moghal N, Sternberg PW. The epidermal growth factor system in Caenorhabditis elegans.
Exp Cell Res. 2003, 284:150-159.
Moghal N, Sternberg PW. A component of the transcriptional mediator complex inhibits
RAS-dependent vulval fate specification in C. elegans. Development.
2003, 130:57-69.
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